Pose2Sim Blender

`Pose2Sim_Blender` is a Blender add-on for visualizing Pose2Sim results -- and more.
Pose2Sim is an open-source pipeline for obtaining research-grade 3D motion analysis from consumer-grade cameras (such as phones, webcams, GoPros, etc).
This add-on can be used to visualize:
Camera calibration (from a `.toml` file)
Markers (from a `.trc` or `.c3d` file)
OpenSim data (such as `.osim` models, `.mot` motions, and `.mot` forces)
And much more...
Pose2Sim.Blender.mp4
N.B.:
OpenSim is an open-source software for research in biomechanics, widely used in motion capture (MoCap).
Blender is an open-source software used for 3D modeling, animation, and rendering. \

Installation
Quick install
Full install
Demonstration
Camera tools
OpenSim imports
Other tools
How to cite and how to contribute

Installation

Quick install

N.B.: Full install is required for importing `.mot` motion files.
Install Blender
Download Pose2Sim_Blender.zip

Open Blender -> Edit -> Preferences -> Add-ons -> Install -> Choose Pose2Sim_Blender.zip
Check `Pose2Sim Blender` to enable it
Press `n` or Click on the tiny arrow on the upper-right corner of the 3D viewport to open the tool

Full install

Full install requires admin rights on your computer. It is a little tricky, but the following steps should do it smoothly. If you encounter any issue, please submit an issue. Only Windows has been tested, but feel free to tell me how it goes on other platforms!

1. Prerequisites

Install Blender (tested on v 3.6 and 4.0.)
Install Miniconda
Download Pose2Sim_Blender.zip

2. Find your Blender Python version

Open Blender, press Shift+F4, type the following lines:

import sys
sys.version

3. Install Sim2Blend libraries

Open Miniconda, and copy-paste these lines. Replace with the Python version you just found:

conda create -n Pose2Sim_Blender python=3.10.12 -y 
conda activate Pose2Sim_Blender
conda install -c opensim-org opensim -y
pip uninstall numpy
pip install numpy bpy toml vtk

4. Install Pose2Sim_Blender add-on

You will need admin rights for the next steps:
Rename `python` in `C:\Program Files\Blender Foundation\Blender 3.6\3.6\python` to `python_old`
Copy-paste there your `Pose2Sim_Blender` environment folder (to find its location, type `conda env list` in Anaconda prompt). Rename it to `python`
Open `C:\Program Files\Blender Foundation\Blender 3.6\3.6\python\Lib\opensim\init.py`
comment out the line `# from .moco import *`
line 4, add the path to your OpenSim bin folder: `os.add_dll_directory(r"C:/OpenSim 4.4/bin")` (or 4.5, depending on your version)

5. Install Pose2Sim_Blender add-on in Blender

Blender -> Edit -> Preferences -> Add-ons -> Install -> Choose Pose2Sim_Blender.zip
Check `Pose2Sim_Blender` to enable it
Press `n` or Click on the tiny arrow on the upper-right corner of the 3D viewport to open the tool

Demonstration

Find example files in the `Examples` folder of your Pose2Sim_Blender.zip archive.

Camera tools

Import:
Import a `.toml` calibration file from Pose2Sim.
Export:
Export updated cameras as a `.toml` calibration file.
Show:
Import videos, image sequences, or still images in your camera frame of reference. The image plane is automatically scaled when translated.
Film:
Render view from all or selected cameras, as a movie or an image sequence. Choose your framerate, the first and last frame to be rendered, and the output quality.

OpenSim imports

Import Markers:
Import a `.trc` or a `.c3d` marker file, e.g., generated by Pose2Sim triangulation.
Import Model:
Import the "bodies" of an `.osim` model.
If you did the full install and some Geometry files exist only as .vtp, they will automatically be converted to .stl.
Import Motion:
Import a `.mot` or a `.csv` motion file.
If you did the full install, you can import a `.mot` file. Calculating all body segment positions may take a while if the model is complex or if there are many time frames. Creates a .csv file for faster loading next time.
If not, you will have to install the OpenSim API outside of Blender and use bodykin_from_mot_osim.py to convert it to .csv.
Import Forces:
Import a `.mot` GRF force file.

Other tools

See through cameras:
View from selected camera, with markers and OpenSim model overlay.
Rays from 3D point:
Trace rays from one or several selected 3D points. This can help you verify if a triangulated point correctly meets 2D keypoints on image planes.
Ray from image point:
Coming soon! Trace ray from a point selected on an image plane. This can help you see if rays intersect correctly.
Export to Alembic:
Export to an `.abc` Alembic "baked" file, for fast import into other softwares.

How to cite and how to contribute

How to cite

If you use Pose2Sim_Blender, please cite [Pagnon, 2023].

 @misc{Pagnon2023,
   author = {Pagnon, David},
   title = {Pose2Sim_Blender - Visualize Pose2Sim data},
   year = {2023},
   doi= {10.5281/zenodo.8421820},
   publisher = {GitHub},
   journal = {GitHub repository},
   howpublished = {\url{https://github.com/davidpagnon/Pose2Sim_Blender}},
 }

How to contribute

I would happily welcome any proposal for new features, code improvement, and more!
If you want to contribute to Sports2D, please follow this guide on how to fork, modify and push code, and submit a pull request. I would appreciate it if you provided as much useful information as possible about how you modified the code, and a rationale for why you're making this pull request. Please also specify on which operating system, as well as which Python, Blender, OpenSim versions you have tested the code.
Here is a to-do list. Feel free to complete it:
Import data from standard OpenSim data files (.osim, .mot, .trc, grf.mot)
Import c3d files (borrowed and adapted from io_anim_c3d )
Save segment position and orientation to .csv files for faster loading of motion next time
Import multiple persons in the same scene
Create Example data
Convert .vtp files to .stl if .stl not found on disk
Rig from OpenSim model and/or imported markers
Import .sto motion and force files
Import .c3d and .trc files with the same appearance
Install OpenSim (for motion .mot files) with a click within the addon (create a venv with the right Python version cf CEB, install OpenSim and the other dependencies)

Import cameras from .toml calibration file
Export cameras to .toml calibration file
Import images, image sequences, and videos in the camera view
Viewport render to film with selected cameras

See through camera and overlay model and markers
Reproject rays from selected 3D points to image view
Trace rays from camera to selected image point
Export to .abc Alembic files

Write documentation
Create video tutorial

Pose2Sim Blender

Contents

Installation
Quick install
Full install
Demonstration
Camera tools
OpenSim imports
Other tools
How to cite and how to contribute

Installation

Quick install

Full install

Full install requires admin rights on your computer. It is a little tricky, but the following steps should do it smoothly. If you encounter any issue, please submit an issue. Only Windows has been tested, but feel free to tell me how it goes on other platforms!

1. Prerequisites

Install Blender (tested on v 3.6 and 4.0.)
Install Miniconda
Download Pose2Sim_Blender.zip

2. Find your Blender Python version

Open Blender, press Shift+F4, type the following lines:
import sys sys.version

3. Install Sim2Blend libraries

Open Miniconda, and copy-paste these lines. Replace with the Python version you just found:
conda create -n Pose2Sim_Blender python=3.10.12 -y conda activate Pose2Sim_Blender conda install -c opensim-org opensim -y pip uninstall numpy pip install numpy bpy toml vtk

4. Install Pose2Sim_Blender add-on

5. Install Pose2Sim_Blender add-on in Blender

Blender -> Edit -> Preferences -> Add-ons -> Install -> Choose Pose2Sim_Blender.zip
Check `Pose2Sim_Blender` to enable it
Press `n` or Click on the tiny arrow on the upper-right corner of the 3D viewport to open the tool

Demonstration

Find example files in the `Examples` folder of your Pose2Sim_Blender.zip archive.

Camera tools

OpenSim imports

Other tools

How to cite and how to contribute

How to cite

How to contribute

Pose2Sim Blender

Contents

InstallationQuick installFull installDemonstrationCamera toolsOpenSim importsOther toolsHow to cite and how to contribute

Installation

Quick install

Full install

Full install requires admin rights on your computer. It is a little tricky, but the following steps should do it smoothly. If you encounter any issue, please submit an issue. Only Windows has been tested, but feel free to tell me how it goes on other platforms!

1. Prerequisites

Install Blender (tested on v 3.6 and 4.0.)Install MinicondaDownload Pose2Sim_Blender.zip

2. Find your Blender Python version

Open Blender, press Shift+F4, type the following lines:import sys sys.version

3. Install Sim2Blend libraries

Open Miniconda, and copy-paste these lines. Replace with the Python version you just found:conda create -n Pose2Sim_Blender python=3.10.12 -y conda activate Pose2Sim_Blender conda install -c opensim-org opensim -y pip uninstall numpy pip install numpy bpy toml vtk

4. Install Pose2Sim_Blender add-on

5. Install Pose2Sim_Blender add-on in Blender

Blender -> Edit -> Preferences -> Add-ons -> Install -> Choose Pose2Sim_Blender.zipCheck Pose2Sim_Blender to enable itPress n or Click on the tiny arrow on the upper-right corner of the 3D viewport to open the tool

Demonstration

Find example files in the Examples folder of your Pose2Sim_Blender.zip archive.

Camera tools

OpenSim imports

Other tools

How to cite and how to contribute

How to cite

How to contribute

Installation
Quick install
Full install
Demonstration
Camera tools
OpenSim imports
Other tools
How to cite and how to contribute

Install Blender (tested on v 3.6 and 4.0.)
Install Miniconda
Download Pose2Sim_Blender.zip

Open Blender, press Shift+F4, type the following lines:
import sys sys.version

Open Miniconda, and copy-paste these lines. Replace with the Python version you just found:
conda create -n Pose2Sim_Blender python=3.10.12 -y conda activate Pose2Sim_Blender conda install -c opensim-org opensim -y pip uninstall numpy pip install numpy bpy toml vtk

Blender -> Edit -> Preferences -> Add-ons -> Install -> Choose Pose2Sim_Blender.zip
Check `Pose2Sim_Blender` to enable it
Press `n` or Click on the tiny arrow on the upper-right corner of the 3D viewport to open the tool

Find example files in the `Examples` folder of your Pose2Sim_Blender.zip archive.

Sales	20+
Published	about 1 year ago
Software Version	4.0, 3.6
License	Mit

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